tests/testthat/test-facets.R

In MSKCC-Epi-Bio/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data

# test facets_dat() ----
#
# test_that("test", {
#    samples <- as.character(unique(mut$Tumor_Sample_Barcode))[1:1000]
#
#    samples.seg <- clin.sample %>%
#      filter(Sample.Identifier %in% samples,
#             as.numeric(as.character(Tumor.Purity)) > 30) %>%
#      pull(Sample.Identifier)
#
#    expect_error(facets_heatmap(seg = gnomeR::seg,
#                            samples=samples.seg[0:10]), NA)
#
# })
#
# # test facets_heatmap() ----
#
# test_that("test", {
#   samples <- as.character(unique(mut$Tumor_Sample_Barcode))[1:1000]
#
#   samples.seg <- clin.sample %>%
#     filter(Sample.Identifier %in% samples,
#            as.numeric(as.character(Tumor.Purity)) > 30) %>%
#     pull(Sample.Identifier)
#
#   expect_error(facets_heatmap(seg = gnomeR::seg,
#                               samples=samples.seg[0:10]), NA)
#
#   test_pl <- facets_heatmap(seg = gnomeR::seg, samples=samples.seg[0:20])
#   expect_equal(class(test_pl$p), "trellis")
# })