load_all_protein_coding_symbols: load_all_protein_coding_symbols
In MTZimmer/RITAN: Rapid Integration of Term Annotation and Network resources
Description
Usage
Arguments
Value
View source: R/lib_enrichment.R
Description
The character array returned is, by default, all human protein coding gene symbols. This variable defines the "universe of possible genes" for use in enrichment. Users should load a different "universe" or filter this one down to the most appropriate setting for their current study. For example, if running RNA-Seq, genes are in the universie if they are detected in any sample.
Usage
1
2
load_all_protein_coding_symbols(file = "ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/locus_groups/protein-coding_gene.txt",
col_name = "symbol")
Arguments
file
file name of a table containing gene symbols
col_name
column name within "file" that contains symbols
Value
A unique list of gene symbols from the current protein coding set at the EBI
MTZimmer/RITAN documentation built on Feb. 21, 2020, 7:09 a.m.
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Description Usage Arguments Value
View source: R/lib_enrichment.R
Description
The character array returned is, by default, all human protein coding gene symbols. This variable defines the "universe of possible genes" for use in enrichment. Users should load a different "universe" or filter this one down to the most appropriate setting for their current study. For example, if running RNA-Seq, genes are in the universie if they are detected in any sample.
Usage
1 2 | load_all_protein_coding_symbols(file = "ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/locus_groups/protein-coding_gene.txt",
col_name = "symbol")
|
Arguments
file |
file name of a table containing gene symbols |
col_name |
column name within "file" that contains symbols |
Value
A unique list of gene symbols from the current protein coding set at the EBI
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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