plot.term_enrichment: plot.term_enrichment

In MTZimmer/RITAN: Rapid Integration of Term Annotation and Network resources

Description

plot.term_enrichment

Usage

## S3 method for class 'term_enrichment'
plot(x = NA, min_q = 0.05, max_terms = 25,
  extend_mar = c(0, 10, 0, 0), ...)

Arguments

x	data frame returned by term_enrichment
min_q	Only q-values more significant than this threshold will be plotted. Default = 0.05.
max_terms	Up to max_terms will be plotted. Default = 25.
extend_mar	Term names can be long. We attempt to keep them readable by extending the left-hand-side margins automatically. Default = c(0,10,0,0) added to par()$mar.
...	Additional arguments are passed on to plot()

Value

silent return from plot

Examples

require(RITANdata)
e <- term_enrichment(vac1.day0vs31.de.genes, resources = 'GO_slim_generic')
plot(e, min_q = .1)

MTZimmer/RITAN documentation built on Feb. 21, 2020, 7:09 a.m.