resource_reduce: resource_reduce Merge terms across resources to reduce the...

Description Usage Arguments Value Examples

View source: R/lib_enrichment.R

Description

resource_reduce Merge terms across resources to reduce the number of redundant and semi-redundant terms

Usage

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resource_reduce(genesets = NULL, min_overlap = 0.8, verbose = TRUE)

Arguments

genesets

the input genesets to consider. May be from one or multiple resources.

min_overlap

terms that share at least this fraction of genes will be merged

verbose

if TRUE, print status and summary output

Value

the list of terms, after merging to reduce redundnat and semi-redundant terms

Examples

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require(RITANdata)
r <- resource_reduce( geneset_list$DisGeNet )

MTZimmer/RITAN documentation built on Feb. 21, 2020, 7:09 a.m.