resource_reduce: resource_reduce Merge terms across resources to reduce the...
In MTZimmer/RITAN: Rapid Integration of Term Annotation and Network resources
Description
Usage
Arguments
Value
Examples
View source: R/lib_enrichment.R
Description
resource_reduce
Merge terms across resources to reduce the number of redundant and semi-redundant terms
Usage
1
resource_reduce(genesets = NULL, min_overlap = 0.8, verbose = TRUE)
Arguments
genesets
the input genesets to consider. May be from one or multiple resources.
min_overlap
terms that share at least this fraction of genes will be merged
verbose
if TRUE, print status and summary output
Value
the list of terms, after merging to reduce redundnat and semi-redundant terms
Examples
1
2
require(RITANdata)
r <- resource_reduce( geneset_list$DisGeNet )
MTZimmer/RITAN documentation built on Feb. 21, 2020, 7:09 a.m.
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Description Usage Arguments Value Examples
View source: R/lib_enrichment.R
Description
resource_reduce Merge terms across resources to reduce the number of redundant and semi-redundant terms
Usage
1 | resource_reduce(genesets = NULL, min_overlap = 0.8, verbose = TRUE)
|
Arguments
genesets |
the input genesets to consider. May be from one or multiple resources. |
min_overlap |
terms that share at least this fraction of genes will be merged |
verbose |
if TRUE, print status and summary output |
Value
the list of terms, after merging to reduce redundnat and semi-redundant terms
Examples
1 2 | require(RITANdata)
r <- resource_reduce( geneset_list$DisGeNet )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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