summary.term_enrichment_by_subset: summary.term_enrichment_by_subset

In MTZimmer/RITAN: Rapid Integration of Term Annotation and Network resources

Description

summary.term_enrichment_by_subset

Usage

## S3 method for class 'term_enrichment_by_subset'
summary(object, verbose = TRUE, ...)

Arguments

object	data frame returned by term_enrichment_by_subset()
verbose	if TRUE (default), print a header describing the data type
...	Further arguments are passed on to head()

Value

the data.frame of top enrichment results

Examples

require(RITANdata)
vac1.de.genes <- list(vac1.day0vs31.de.genes, vac1.day0vs56.de.genes)
names(vac1.de.genes) <- c("Day0vs31", "Day0vs56")
e <- term_enrichment_by_subset(vac1.de.genes, "MSigDB_Hallmarks", q_value_threshold = 0.1 )
summary(e)

MTZimmer/RITAN documentation built on Feb. 21, 2020, 7:09 a.m.