browseIntervals: Browse genomic intervals

In MalteThodberg/tidyGenomeBrowser: Easy Genome Browser Figures Using R / Bioconductor

Browse genomic intervals

Description

Genome browser-type plot of intervals, e.g. BED-like data.

Usage

browseIntervals(object, ...)

## S4 method for signature 'ANY'
browseIntervals(object, region = NULL)

## S4 method for signature 'GenomicRangesList'
browseIntervals(object, region = NULL, plot = TRUE)

## S4 method for signature 'GenomicRanges'
browseIntervals(object, region = NULL, plot = TRUE)

## S4 method for signature 'data.frame'
browseIntervals(object, region)

Arguments

object	GRangesList, GRanges or data.frame: Genomic intervals.
...	not currently used.
region	GRanges or NULL: Plotting window.
plot	logical: Whether to produce a plot or return the plot data.

Details

browseIntervals can react to metadata columns: 'color', 'facet', 'thick', 'thickStart', 'thickEnd'

Value

ggplot or data.frame.

Examples

# TBA

MalteThodberg/tidyGenomeBrowser documentation built on Feb. 21, 2024, 8:39 p.m.