browseSignal: Browse genomic signal

In MalteThodberg/tidyGenomeBrowser: Easy Genome Browser Figures Using R / Bioconductor

Browse genomic signal

Description

Genome browser-type plot of genoomic signal, e.g. BigWig/bedGraph-like data.

Usage

browseSignal(object, ...)

## S4 method for signature 'ANY'
browseSignal(object)

## S4 method for signature 'GenomicRangesList'
browseSignal(object, region = NULL, plot = TRUE)

## S4 method for signature 'GenomicRanges'
browseSignal(object, region = NULL, plot = TRUE)

## S4 method for signature 'data.frame'
browseSignal(object, region)

Arguments

object	GenomicRangesList, GenomicRanges or data.frame: Genomic signal.
...	not currently used.
region	GRanges or NULL: Plotting window.
plot	logical: Whether to produce a plot or return the plot data.

Details

browseSignal needs the following columns: 'score' and can react to: 'pos', 'color', 'facet'.

Value

ggplot or data.frame.

Examples

browseSignal(ATAC_signal)
browseSignal(CAGE_CTSSs)
# See readme for more examples!

MalteThodberg/tidyGenomeBrowser documentation built on Feb. 21, 2024, 8:39 p.m.