browseSegments: Browse genomic segments

In MalteThodberg/tidyGenomeBrowser: Easy Genome Browser Figures Using R / Bioconductor

Browse genomic segments

Description

Genome browser-type plot of genomic segments or states.

Usage

browseSegments(object, ...)

## S4 method for signature 'ANY'
browseSegments(object, region = NULL)

## S4 method for signature 'GenomicRangesList'
browseSegments(object, region = NULL, plot = TRUE)

## S4 method for signature 'GenomicRanges'
browseSegments(object, region = NULL, plot = TRUE)

## S4 method for signature 'data.frame'
browseSegments(object, region)

Arguments

object	GRangesList, GRanges or data.frame: Genomic intervals.
...	not currently used.
region	GRanges or NULL: Plotting window.
plot	logical: Whether to produce a plot or return the plot data.

Details

browseSegments can react to metadata columns: 'color', 'name', 'facet'.

Value

ggplot or data.frame.

Examples

# TBA

MalteThodberg/tidyGenomeBrowser documentation built on Feb. 21, 2024, 8:39 p.m.