NMRun-class: NONMEM run container class
In MangoTheCat/RNMImport: Tools for importing and manipulating NONMEM data.

Description Objects from the Class Slots Methods Author(s) Examples

This is the basic class for handling a standard NONMEM run. In essence, it holds several individual problems which may be of type NMBasicModel, NMSimModel, and NMSimDataGen. It also holds the control file and list output file text

Objects of this class are typically created with the importNm function, which imports a NONMEM run on the basis of its control file.

controlText:: Text of the control file, without comments
reportText:: Text of the report file
nmVersionMajor:: Major version of NONMEM
nmVersionMinor:: Minor version of NONMEM
controlComments:: Comments of each line of the control file
controlFileInfo:: Information about the control file
reportFileInfo:: Information about the list file
numProblems:: Number of problems in the run
problems:: List of the actual problem results

getMethodNames: signature(obj = "NMRun"): Retrieves the estimation method names
getOmegas: signature(obj = "NMRun"): Retrieves the omega estimates from a particular problem
getSigmas: signature(obj = "NMRun"): Retrieves the sigma estimates from a particular problem
getThetas: signature(obj = "NMRun"): Retrieves the theta estimates from a particular problem
addDerivedCategorical: signature(obj = "NMRun"): Create user-defined categorical variables
imposeCategoryFormat: signature(obj = "NMRun"): Coerces variables to categories
nmData: Extracts the input and/or output data of one of the problems in the run.
show: Prints basic information about the run.
getEstimateCov: signature(obj = "NMRun"): ...
addedData: signature(obj = "NMRun"): Extracts user-created data (typically through) addDerivedCategorical into a data.frame from a specified problem.
getObjective: signature(obj = "NMRun")
getControlStatements: signature(obj = "NMRun"): Extract an object with parsed statements control file corresponding to a particular problem
getNmVersion: signature(obj = "NMRun"): Extract information about NONMEM version used for compiling problem
getSimInfo: signature(obj = "NMRun"): Get Simulation Information