marker_genes: select marker genes following description in Baron et al.,...

In MarianSchoen/DMC: Comparison of different Deconvolution Models in several scenarios

select marker genes following description in Baron et al., 2016

Description

select marker genes following description in Baron et al., 2016

Usage

marker_genes(exprs, pheno, sig.types = NULL, cell.type.column = "cell_type")

Arguments

exprs	matrix containing single cell profiles as columns
pheno	phenotype data corresponding to the expression matrix. Has to contain single cell labels in a column named 'cell.type.column'
sig.types	character vector containing cell types for which marker genes should be selected. Default is all of them.
cell.type.column	string, which column of 'pheno' holds the cell type information?

Value

list containing a vector of marker genes for each cell type

MarianSchoen/DMC documentation built on Aug. 2, 2022, 3:05 p.m.