write_data: write scRNA-Seq profiles and pheno data, RNA-Seq bulk data...

In MarianSchoen/DMC: Comparison of different Deconvolution Models in several scenarios

write scRNA-Seq profiles and pheno data, RNA-Seq bulk data and cell type proportions within the bulks in format used by benchmark to hdf5 file

Description

write scRNA-Seq profiles and pheno data, RNA-Seq bulk data and cell type proportions within the bulks in format used by benchmark to hdf5 file

Usage

write_data(
  sc.counts = NULL,
  sc.pheno = NULL,
  bulk.counts = NULL,
  bulk.props = NULL,
  filename
)

Arguments

sc.counts	numeric matrix, with feature as rows and scRNA-Seq profiles as columns
sc.pheno	data frame, with scRNA-Seq profiles as rows, and pheno entries as rows
bulk.counts	numeric matrix, with features as rows bulk measurements as columns
bulk.props	numeric matrix containing cell type proportions, cell types as rows, bulks as columns
filename	string, where should the data be stored?

Value

NULL, function saves into ‘filename‘

MarianSchoen/DMC documentation built on Aug. 2, 2022, 3:05 p.m.