read_data: read data conforming to the format used by benchmark for data...

In MarianSchoen/DMC: Comparison of different Deconvolution Models in several scenarios

read data conforming to the format used by benchmark for data storage

Description

read data conforming to the format used by benchmark for data storage

Usage

read_data(filename)

Arguments

filename

string, which file should be read in?

Value

list with:
- sc.counts: numeric matrix, features as rows, scRNA-Seq profiles as colums
- sc.pheno: dataframe with scRNA-Seq profiles as rows, and multiple pheno columns
- bulk.counts: numeric matrix, features as rows, bulk measurements as columns
- bulk.props: numeric matrix, cell types as rows, bulks as columns
- bulk.pheno: dataframe containing pheno data for bulks in columns, bulks as rows

MarianSchoen/DMC documentation built on Aug. 2, 2022, 3:05 p.m.