permute_ci: Permute for confidence interval
In MarianaLag/Mlag: Tools Related to the Spatial Analysis of Genetic Marker Data

Description Usage Arguments Value Author(s)

This function takes some data and does permutations on it and passes it along to the indicated function. There are options for permuting genotypes or permuting alleles. Make sure you know the difference.

permute_ci(
  x,
  stratum = NULL,
  allele_perm = TRUE,
  nperm = 99,
  FUN = NULL,
  replace = FALSE,
  ...
)

`x`	The `locus` data being used.
`stratum`	An optional argument if passed, permutes `x` among strata and gives the results to the function.
`allele_perm`	A flag (default=TRUE) to permute alleles in the creating the new data set.
`nperm`	The number of perms to use (default 99).
`FUN`	the function to pass the permuted data to.
`replace`	A flag indicating if randomization should be with replacement (default FALSE)
`...`	Passed on as arguments to `FUN`.