dist_bray: Estimation of jaccard distance
In MarianaLag/Mlag: Tools Related to the Spatial Analysis of Genetic Marker Data

Description Usage Arguments Value Author(s) Examples

This function returns a measure of genetic distance based upon the AMOVA distance metric.

1	dist_bray(x, stratum = "Population")

`x`	Either a `data.frame` with both stratum and `locus` objects in them (for strata distance) OR a vector of `locus` objects and this will calculate distance based upon individual genetic distances.
`stratum`	The name of the stratum variable in `x`

A matrix of Jaccard distance

Rodney J. Dyer rjdyer@vcu.edu

 
AA <- locus( c("A","A") )
AB <- locus( c("A","B") )
AC <- locus( c("A","C") )
BB <- locus( c("B","B") )
BC <- locus( c("B","C") )
CC <- locus( c("C","C") )
loci <- c(AA,AA,AB,AA,BB,BC,CC,BB,BB,CC)
df <- data.frame( Population=c(rep("A",5),rep("B",5) ), TPI=loci )
D <- dist_bray(df)