Files in MarianaLag/Mlag

Tools Related to the Spatial Analysis of Genetic Marker Data

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NEWS

R/a.R R/ae.R R/allele_counts.R R/alleles.R R/as_data_frame.R R/bad_parents.R R/column_class.R R/cov2dist.R R/create_resistances.R R/dest.R R/dist2cov.R R/dist_amova.R R/dist_bray.R R/dist_cavalli.R R/dist_cgd.R R/dist_euclidean.R R/dist_jaccard.R R/dist_nei.R R/dist_ss.R R/distance_to_covariance.R R/exclusion_probability.R R/fis.R R/frequencies.R R/frequency_matrix.R R/fst.R R/gendist_nei_test.R R/genetic_autocorrealtion.R R/genetic_distance.R R/genetic_diversity.R R/genetic_relatedness.R R/genetic_structure.R R/genotype_counts.R R/genotype_frequencies.R R/geom_frequencies.R R/geom_locus.R R/geom_strata.R R/geom_strata_label.R R/geom_surface.R R/gst.R R/gst_prime.R R/gstudio-package.R R/harmonic_mean.R R/he.R R/hes.R R/ho.R R/hos.R R/ht.R R/hwe.R R/indices.R R/is_frequency.R R/is_heterozygote.R R/is_na.R R/kronecker_delta.R R/lag_matrix.R R/locus.R R/make_loci.R R/make_population.R R/mate.R R/maximum_allele_size.R R/migrate.R R/minus_mom.R R/mixed_mating.R R/multilocus_assignment.R R/multilocus_diversity.R R/optimal_sampling.R R/parent_finder.R R/partition.R R/paternity.R R/pe.R R/permute_ci.R R/permute_matrix.R R/pies_on_map.R R/ploidy.R R/plot.R R/plot_populations.R R/population_graph.R R/population_map.R R/rarefaction.R R/read_population.R R/rel_lynch.R R/rel_nason.R R/rel_queller.R R/rel_ritland.R R/spiderplot_data.R R/strata_coordinates.R R/strata_distance.R R/subsample_loci.R

R/test.R

R/to_dfdist.R R/to_fixed_locus.R R/to_genepop.R R/to_mv.R R/to_mv_freq.R R/to_structure.R R/transition_probability.R R/write_population.R README.md

data/aflp_arapat.rda

data/arapat.rda

data/cornus.rda

data/cornus_florida.rda

data/rice_canopy.rda

gstudio.Rproj

inst/extdata/data_2_column.csv

inst/extdata/data_aflp.csv

inst/extdata/data_separated.csv

inst/extdata/data_snp.csv

inst/extdata/data_structure.str

inst/extdata/data_zymelike.csv

inst/extdata/genepop.txt

inst/extdata/grid.csv

inst/extdata/snp_prob.csv

man/A.Rd man/Ae.Rd man/Dest.Rd man/Fis.Rd man/Fst.Rd man/Gst.Rd man/Gst_prime.Rd man/He.Rd man/Hes.Rd man/Ho.Rd man/Hos.Rd man/Ht.Rd man/Pe.Rd man/aflp_arapat.Rd man/allele_counts.Rd man/alleles.Rd man/arapat.Rd man/as.data.frame.genind.Rd man/as.data.frame.locus.Rd man/as.list.locus.Rd man/as.locus.Rd man/bad_parents.Rd man/c.locus.Rd man/column_class.Rd man/cornus.Rd man/cornus_florida.Rd man/cov2dist.Rd man/create_resistances.Rd man/data_2_column.Rd man/data_aflp.Rd man/data_separated.Rd man/data_snp.Rd man/data_zymelike.Rd man/dist2cov.Rd man/dist_amova.Rd man/dist_bray.Rd man/dist_cavalli.Rd man/dist_cgd.Rd man/dist_euclidean.Rd man/dist_jaccard.Rd man/dist_nei.Rd man/dist_ss.Rd man/distance_to_covariance.Rd man/exclusion_probability.Rd man/frequencies.Rd man/frequency_matrix.Rd man/genetic_autocorrelation.Rd man/genetic_distance.Rd man/genetic_diversity.Rd man/genetic_relatedness.Rd man/genetic_structure.Rd man/genotype_counts.Rd man/genotype_frequencies.Rd man/geom_frequencies.Rd man/geom_locus.Rd man/geom_strata.Rd man/geom_strata_label.Rd man/geom_surface.Rd man/grid.csv.Rd man/gstudio-package.Rd man/harmonic_mean.Rd man/hwe.Rd man/indices.Rd man/is.locus.Rd man/is.na.locus.Rd man/is_frequency.Rd man/is_heterozygote.Rd man/kronecker_delta.Rd man/lag_matrix.Rd man/locus-operator-index.Rd man/locus-operator-minus.Rd man/locus-operator-plus.Rd man/locus.Rd man/make_loci.Rd man/make_population.Rd man/mate.Rd man/maximum_allele_size.Rd man/migrate.Rd man/minus_mom.Rd man/mixed_mating.Rd man/multilocus_assignment.Rd man/multilocus_diversity.Rd man/optimal_sampling.Rd man/parent_finder.Rd man/partition.Rd man/paternity.Rd man/permute_ci.Rd man/permute_matrix.Rd man/ploidy.Rd man/plot.locus.Rd man/plot_populations.Rd man/population_graph.Rd man/population_map.Rd man/print.locus.Rd man/rarefaction.Rd man/read_population.Rd man/rel_lynch.Rd man/rel_nason.Rd man/rel_queller.Rd man/rel_ritland.Rd man/rep.locus.Rd man/rice.Rd man/snp_prob.csv.Rd man/spiderplot_data.Rd man/strata_coordinates.Rd man/strata_distance.Rd man/subsample_loci.Rd man/summary.locus.Rd man/to_dfdist.Rd man/to_fixed_locus.Rd man/to_genepop.Rd man/to_mv.Rd man/to_mv_freq.Rd man/to_structure.Rd man/transition_probability.Rd man/write_population.Rd tests/testthat.R

tests/testthat/.gitignore

tests/testthat/test-A.R tests/testthat/test-Ae.R tests/testthat/test-Pe.R tests/testthat/test-alleles.R tests/testthat/test-as_data_frame.R tests/testthat/test-bad_parents.R tests/testthat/test-column_class.R tests/testthat/test-dest.R tests/testthat/test-dist_amova.R tests/testthat/test-dist_bray.R tests/testthat/test-dist_cavalli.R tests/testthat/test-dist_cgd.R tests/testthat/test-dist_euclidean.R tests/testthat/test-dist_jaccard.R tests/testthat/test-dist_nei.R tests/testthat/test-dist_ss.R tests/testthat/test-f_statistics.R tests/testthat/test-frequencies.R tests/testthat/test-frequency_matrix.R tests/testthat/test-fst.R tests/testthat/test-genetic_distance.R tests/testthat/test-genetic_diversity.R tests/testthat/test-genetic_relatedness.R tests/testthat/test-genetic_structure.R tests/testthat/test-genotype_counts.R tests/testthat/test-genotype_frequencies.R tests/testthat/test-geom_frequencies.R tests/testthat/test-geom_locus.R tests/testthat/test-geom_strata.R tests/testthat/test-geom_surface.R tests/testthat/test-gst.R tests/testthat/test-gst_prime.R tests/testthat/test-he.R tests/testthat/test-ho.R tests/testthat/test-ht.R tests/testthat/test-indices.R tests/testthat/test-is_heterozygote.R tests/testthat/test-is_na.R tests/testthat/test-kronecker_delta.R tests/testthat/test-lab_matrix.R tests/testthat/test-locus.R tests/testthat/test-make_loci.R tests/testthat/test-make_population.R tests/testthat/test-mate.R tests/testthat/test-maximum_allele_size.R tests/testthat/test-minus_mom.R tests/testthat/test-mixed_mating.R tests/testthat/test-multilocus_assignment.R tests/testthat/test-multilocus_diversity.R tests/testthat/test-parent_finder.R tests/testthat/test-partition.R tests/testthat/test-paternity.R tests/testthat/test-permute_ci.R tests/testthat/test-pies_on_map.R tests/testthat/test-ploidy.R tests/testthat/test-plot.R tests/testthat/test-population_map.R tests/testthat/test-rarefaction.R tests/testthat/test-read_population.R tests/testthat/test-rel_lynch.R tests/testthat/test-rel_nason.R tests/testthat/test-rel_queller.R tests/testthat/test-rel_ritland.R tests/testthat/test-strata_coordinates.R tests/testthat/test-strata_distance.R tests/testthat/test-to_fixed_locus.R tests/testthat/test-to_genepop.R tests/testthat/test-to_mv.R tests/testthat/test-to_structure.R tests/testthat/test-transition_probability.R tests/testthat/test-write_population.R

vignettes/gstudio.Rnw

MarianaLag/Mlag documentation built on Feb. 13, 2020, 12:30 a.m.