context("dist_cavalli.R")
test_that("individual",{
AA <- locus( c("A","A") )
AB <- locus( c("A","B") )
BB <- locus( c("B","B") )
AC <- locus( c("A","C") )
AD <- locus( c("A","D") )
BC <- locus( c("B","C") )
BD <- locus( c("B","D") )
CC <- locus( c("C","C") )
CD <- locus( c("C","D") )
DD <- locus( c("D","D") )
loc1 <- c(AA,AB,AC,AD,BB,BC,BD,CC,CD,DD)
loc2 <- c(AA,AA,AC,AA,CC,CC,AC,CC,AA,AC)
df <- data.frame( Population=c(rep("Pop-A",5),rep("Pop-B",5)), TPI=loc1, PGM=loc2 )
suppressWarnings( Dc <- dist_cavalli( df ) )
expect_that( Dc, is_a("matrix"))
expect_that( dim(Dc), is_equivalent_to( c(2,2) ) )
expect_that( sum(diag(Dc)), equals(0))
expect_true( Dc[1,2]==Dc[2,1])
cat("?")
expect_true( Dc[1,2]>0.73 )
expect_true( Dc[1,2]<0.74 )
})
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.