Files in MarioniLab/scran
Methods for Single-Cell RNA-Seq Data Analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/DM.R
R/RcppExports.R
R/buildSNNGraph.R
R/clusterCells.R
R/combineBlocks.R
R/combineMarkers.R
R/combinePValues.R
R/combineVar.R
R/computeMinRank.R
R/computeSumFactors.R
R/convertTo.R
R/correlateGenes.R
R/correlateNull.R
R/correlatePairs.R
R/cyclone.R
R/decideTestsPerLabel.R
R/defunct.R
R/denoisePCA.R
R/expandPairings.R
R/findMarkers.R
R/fitTrendCV2.R
R/fitTrendPoisson.R
R/fitTrendVar.R
R/fixedPCA.R
R/getClusteredPCs.R
R/getMarkerEffects.R
R/getTopHVGs.R
R/getTopMarkers.R
R/modelGeneCV2.R
R/modelGeneCV2WithSpikes.R
R/modelGeneVar.R
R/modelGeneVarByPoisson.R
R/modelGeneVarWithSpikes.R
R/multiMarkerStats.R
R/namespace.R
R/pairwiseBinom.R
R/pairwiseTTests.R
R/pairwiseWilcox.R
R/pseudoBulkDGE.R
R/pseudoBulkSpecific.R
R/quickCluster.R
R/quickSubCluster.R
R/rhoToPValue.R
R/sandbag.R
R/scaledColRanks.R
R/scoreMarkers.R
R/summaryMarkerStats.R
R/testLinearModel.R
R/utils_markers.R
R/utils_parallel.R
R/utils_pca.R
R/utils_tricube.R
R/utils_variance.R
inst/CITATION
inst/NEWS.Rd
inst/exdata/generate_markers.R
inst/exdata/human_cycle_markers.rds
inst/exdata/mouse_cycle_markers.rds
man/DM.Rd
man/buildSNNGraph.Rd
man/clusterCells.Rd
man/combineBlocks.Rd
man/combineMarkers.Rd
man/combinePValues.Rd
man/combineVar.Rd
man/computeMinRank.Rd
man/computeSumFactors.Rd
man/convertTo.Rd
man/correlateGenes.Rd
man/correlateNull.Rd
man/correlatePairs.Rd
man/cyclone.Rd
man/decideTestsPerLabel.Rd
man/defunct.Rd
man/denoisePCA.Rd
man/findMarkers.Rd
man/fitTrendCV2.Rd
man/fitTrendPoisson.Rd
man/fitTrendVar.Rd
man/fixedPCA.Rd
man/gene_selection.Rd
man/getClusteredPCs.Rd
man/getMarkerEffects.Rd
man/getTopHVGs.Rd
man/getTopMarkers.Rd
man/logBH.Rd
man/modelGeneCV2.Rd
man/modelGeneCV2WithSpikes.Rd
man/modelGeneVar.Rd
man/modelGeneVarByPoisson.Rd
man/modelGeneVarWithSpikes.Rd
man/multiMarkerStats.Rd
man/pairwiseBinom.Rd
man/pairwiseTTests.Rd
man/pairwiseWilcox.Rd
man/pseudoBulkDGE.Rd
man/pseudoBulkSpecific.Rd
man/quickCluster.Rd
man/quickSubCluster.Rd
man/rhoToPValue.Rd
man/sandbag.Rd
man/scaledColRanks.Rd
man/scoreMarkers.Rd
man/summaryMarkerStats.Rd
man/testLinearModel.Rd
src/Makevars
src/RcppExports.cpp
src/choose_effect_size.cpp
src/combine_rho.cpp
src/compute_blocked_stats.cpp
src/compute_residual_stats.cpp
src/compute_rho_null.cpp
src/cyclone_scores.cpp
src/overlap_exprs.cpp
src/rand_custom.cpp
src/rand_custom.h
src/utils.h
tests/testthat.R
tests/testthat/setup.R
tests/testthat/test-altrep.R
tests/testthat/test-build-snn.R
tests/testthat/test-colranks.R
tests/testthat/test-combine-markers.R
tests/testthat/test-combine-p.R
tests/testthat/test-combine-var.R
tests/testthat/test-convert.R
tests/testthat/test-correlate-genes.R
tests/testthat/test-correlate-pairs.R
tests/testthat/test-cyclone.R
tests/testthat/test-denoise-pca.R
tests/testthat/test-expand-pairings.R
tests/testthat/test-fixed-pca.R
tests/testthat/test-linear-test.R
tests/testthat/test-markers.R
tests/testthat/test-model-cv2.R
tests/testthat/test-model-var.R
tests/testthat/test-multi-markers.R
tests/testthat/test-pairwise-binom.R
tests/testthat/test-pairwise-t.R
tests/testthat/test-pairwise-wilcox.R
tests/testthat/test-pseudo-dge.R
tests/testthat/test-pseudo-spec.R
tests/testthat/test-quickclust.R
tests/testthat/test-sandbag.R
tests/testthat/test-score-markers.R
tests/testthat/test-subclust.R
tests/testthat/test-top-hvgs.R
tests/testthat/test-trend-cv2.R
tests/testthat/test-trend-var.R
vignettes/ref.bib
vignettes/scran.Rmd
