computeSumFactors: Normalization by deconvolution

In MarioniLab/scran: Methods for Single-Cell RNA-Seq Data Analysis

Normalization by deconvolution

Description

Scaling normalization of single-cell RNA-seq data by deconvolving size factors from cell pools. These functions have been moved to the scuttle package and are just retained here for compatibility.

Usage

computeSumFactors(...)

calculateSumFactors(...)

Arguments

...	Further arguments to pass to pooledSizeFactors or computePooledFactors.

Value

For calculateSumFactors, a numeric vector of size factors returned by pooledSizeFactors.

For computeSumFactors, a SingleCellExperiment containing the size factors in its sizeFactors, as returned by computePooledFactors.

Author(s)

Aaron Lun

MarioniLab/scran documentation built on Sept. 7, 2024, 6:25 a.m.