Files in MarioniLab/scran
Methods for Single-Cell RNA-Seq Data Analysis

DESCRIPTION
NAMESPACE
R/DM.R R/buildSNNGraph.R R/clusterModularity.R R/combineVar.R R/computeSpikeFactors.R R/computeSumFactors.R R/convertTo.R R/correlateNull.R R/correlatePairs.R R/cosineNorm.R R/cyclone.R R/decomposeVar.R R/denoisePCA.R R/doubletCluster.R R/fastMNN.R R/findMarkers.R R/improvedCV2.R R/makeTechTrend.R R/mnnCorrect.R R/multiBatchNorm.R R/multiBatchPCA.R R/multiBlockNorm.R R/multiBlockVar.R R/namespace.R R/overlapExprs.R R/parallelPCA.R R/quickCluster.R R/sandbag.R R/technicalCV2.R R/testVar.R R/trendVar.R R/utils_linearmod.R R/utils_multibatch.R R/utils_parallel.R R/utils_subset.R R/utils_variance.R
inst/CITATION
inst/NEWS.Rd
inst/exdata/generate_markers.R
inst/exdata/human_cycle_markers.rds
inst/exdata/mouse_cycle_markers.rds
man/DM.Rd man/buildSNNGraph.Rd man/clusterModularity.Rd man/combineVar.Rd man/computeSpikeFactors.Rd man/computeSumFactors.Rd man/convertTo.Rd man/correlatePairs.Rd man/cosineNorm.Rd man/cyclone.Rd man/decomposeVar.Rd man/denoisePCA.Rd man/doubletCluster.Rd man/fastMNN.Rd man/findMarkers.Rd man/improvedCV2.Rd man/makeTechTrend.Rd man/mnnCorrect.Rd man/multiBatchNorm.Rd man/multiBatchPCA.Rd man/multiBlockNorm.Rd man/multiBlockVar.Rd man/overlapExprs.Rd man/parallelPCA.Rd man/quickCluster.Rd man/sandbag.Rd man/technicalCV2.Rd man/testVar.Rd man/trendVar.Rd
src/Makevars
src/Makevars.win
src/build_snn.cpp
src/calc_log_count_stats.cpp
src/combine_simes.cpp
src/compute_CV2.cpp
src/compute_rho.cpp
src/find_mutual_nns.cpp
src/fit_linear_model.cpp
src/forge_system.cpp
src/get_residuals.cpp
src/get_scaled_ranks.cpp
src/init.cpp
src/overlap_exprs.cpp
src/run_dormqr.cpp
src/run_dormqr.h
src/scran.h
src/shuffle_matrix.cpp
src/shuffle_scores.cpp
src/utils.cpp
src/utils.h
tests/testthat.R tests/testthat/test-altrep.R tests/testthat/test-convert.R tests/testthat/test-correlate.R tests/testthat/test-cyclone.R tests/testthat/test-denoise.R tests/testthat/test-doublet.R tests/testthat/test-fastmnn.R tests/testthat/test-markers.R tests/testthat/test-mnn.R tests/testthat/test-multibatch.R tests/testthat/test-multiblock.R tests/testthat/test-multipca.R tests/testthat/test-overlap.R tests/testthat/test-quickclust.R tests/testthat/test-sandbag.R tests/testthat/test-shuffle.R tests/testthat/test-snn.R tests/testthat/test-spikenorm.R tests/testthat/test-sumnorm.R tests/testthat/test-technical.R tests/testthat/test-utils.R tests/testthat/test-variance.R vignettes/scran.Rmd
MarioniLab/scran documentation built on July 9, 2018, 12:21 p.m.