Files in MarioniLab/scran
Methods for Single-Cell RNA-Seq Data Analysis

DESCRIPTION
NAMESPACE
R/DM.R R/buildSNNGraph.R R/combineVar.R R/computeSpikeFactors.R R/computeSumFactors.R R/convertTo.R R/correlateNull.R R/correlatePairs.R R/cyclone.R R/decomposeVar.R R/denoisePCA.R R/exploreData.R R/findMarkers.R R/improvedCV2.R R/mnnCorrect.R R/overlapExprs.R R/quickCluster.R R/sandbag.R R/selectorPlot.R R/technicalCV2.R R/testVar.R R/trendVar.R R/utils.R
inst/CITATION
inst/NEWS.Rd
inst/exdata/generate_markers.R
inst/exdata/human_cycle_markers.rds
inst/exdata/mouse_cycle_markers.rds
man/DM.Rd man/buildSNNGraph.Rd man/combineVar.Rd man/computeSpikeFactors.Rd man/computeSumFactors.Rd man/convertTo.Rd man/correlatePairs.Rd man/cyclone.Rd man/decomposeVar.Rd man/denoisePCA.Rd man/exploreData.Rd man/findMarkers.Rd man/improvedCV2.Rd man/mnnCorrect.Rd man/overlapExprs.Rd man/quickCluster.Rd man/sandbag.Rd man/selectorPlot.Rd man/technicalCV2.Rd man/testVar.Rd man/trendVar.Rd
src/Makevars
src/Makevars.win
src/build_snn.cpp
src/compute_CV2.cpp
src/compute_rho.cpp
src/find_mutual_nns.cpp
src/fit_linear_model.cpp
src/forge_system.cpp
src/get_residuals.cpp
src/get_scaled_ranks.cpp
src/init.cpp
src/overlap_exprs.cpp
src/run_dormqr.cpp
src/run_dormqr.h
src/scran.h
src/shuffle_scores.cpp
src/sum_spikes.cpp
src/utils.cpp
src/utils.h
tests/testthat.R tests/testthat/test-altrep.R tests/testthat/test-convert.R tests/testthat/test-correlate.R tests/testthat/test-cyclone.R tests/testthat/test-denoise.R tests/testthat/test-markers.R tests/testthat/test-mnn.R tests/testthat/test-normalize.R tests/testthat/test-overlap.R tests/testthat/test-quickclust.R tests/testthat/test-sandbag.R tests/testthat/test-shuffle.R tests/testthat/test-snn.R tests/testthat/test-technical.R tests/testthat/test-variance.R vignettes/scran.Rmd
MarioniLab/scran documentation built on Dec. 8, 2017, 11:08 a.m.