createCompleteIntensityExperiment: Adds 'longIntensityDT' information to 'IntensityExperiment'...
In MassDynamics/MassExpression: MassExpression
View source: R/createCompleteIntensityExperiment.R
createCompleteIntensityExperiment R Documentation
Adds 'longIntensityDT' information to 'IntensityExperiment' with statistics about
the number of replicates and number of imputed values in each condition of interest
Description
Adds 'longIntensityDT' information to 'IntensityExperiment' with statistics about
the number of replicates and number of imputed values in each condition of interest
Usage
createCompleteIntensityExperiment(
IntensityExperiment,
limmaStats,
normalisationAppliedToAssay,
longIntensityDT,
conditionComparisonMapping
)
Arguments
IntensityExperiment
output from 'createSummarizedExperiment'
limmaStats
Statistic table from limma output
normalisationAppliedToAssay
one of 'None' or 'Median'
longIntensityDT
Long format table with raw and imputed intensities. Each row is a feature (protein/peptide).
conditionComparisonMapping
a dataframe matching different limma statistics comparison strings to up and down conditions
MassDynamics/MassExpression documentation built on May 7, 2023, 11:29 a.m.
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View source: R/createCompleteIntensityExperiment.R
| createCompleteIntensityExperiment | R Documentation |
Adds 'longIntensityDT' information to 'IntensityExperiment' with statistics about the number of replicates and number of imputed values in each condition of interest
Description
Adds 'longIntensityDT' information to 'IntensityExperiment' with statistics about the number of replicates and number of imputed values in each condition of interest
Usage
createCompleteIntensityExperiment(
IntensityExperiment,
limmaStats,
normalisationAppliedToAssay,
longIntensityDT,
conditionComparisonMapping
)
Arguments
IntensityExperiment |
output from 'createSummarizedExperiment' |
limmaStats |
Statistic table from limma output |
normalisationAppliedToAssay |
one of 'None' or 'Median' |
longIntensityDT |
Long format table with raw and imputed intensities. Each row is a feature (protein/peptide). |
conditionComparisonMapping |
a dataframe matching different limma statistics comparison strings to up and down conditions |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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