normaliseIntensity: This function normalises (based on 'normalisationMethod') the...
In MassDynamics/MassExpression: MassExpression
View source: R/runLimmaPipeline.R
normaliseIntensity R Documentation
This function normalises (based on 'normalisationMethod') the log2 intensities stored in the 'log2NInt' column initialised by 'initialiseLongIntensityDT'.
Description
This function normalises (based on 'normalisationMethod') the log2 intensities stored in the 'log2NInt' column initialised by 'initialiseLongIntensityDT'.
Usage
normaliseIntensity(longIntensityDT, normalisationMethod)
Arguments
longIntensityDT
Output from 'initialiseLongIntensityDT'
normalisationMethod
logical. Whether to perform median normalisation by condition.
Details
Normalisation is only applied to non imputed intensities. 'log2NIntNorm' is NA for imputed intensities.
Value
log2NIntNorm If 'normalisationMethod' is not 'None' a new column is added containing the 'log2NInt' normalised intensities
MassDynamics/MassExpression documentation built on May 7, 2023, 11:29 a.m.
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View source: R/runLimmaPipeline.R
| normaliseIntensity | R Documentation |
This function normalises (based on 'normalisationMethod') the log2 intensities stored in the 'log2NInt' column initialised by 'initialiseLongIntensityDT'.
Description
This function normalises (based on 'normalisationMethod') the log2 intensities stored in the 'log2NInt' column initialised by 'initialiseLongIntensityDT'.
Usage
normaliseIntensity(longIntensityDT, normalisationMethod)
Arguments
longIntensityDT |
Output from 'initialiseLongIntensityDT' |
normalisationMethod |
logical. Whether to perform median normalisation by condition. |
Details
Normalisation is only applied to non imputed intensities. 'log2NIntNorm' is NA for imputed intensities.
Value
log2NIntNorm If 'normalisationMethod' is not 'None' a new column is added containing the 'log2NInt' normalised intensities
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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