plot_samples_correlation_matrix: Correlation plot of samples using DE proteins
In MassDynamics/MassExpression: MassExpression

plot_samples_correlation_matrix

R Documentation

Correlation plot of samples using DE proteins

Description

Correlation plot of samples using DE proteins

Usage

plot_samples_correlation_matrix(
  Experiment,
  assayName = "intensities",
  onlyDEProteins = FALSE,
  title = "All proteins"
)

Arguments

`Experiment`	SummarizedExperiment object of imputed data.
`assayName`	name of assay to use
`onlyDEProteins`	logical. TRUE if only DE proteins should be considered.

Details

#' A protein is defined DE is the adjusted PValue is less than 0.05. When multiple comparisons are available, the adjusted PValues of the F-test is used. At least 5 DE proteins are required to produce the correlation plot.

MassDynamics/MassExpression documentation built on May 7, 2023, 11:29 a.m.