saveOutput: Save RData with SummarizedExperiment object and ProteinViz...
In MassDynamics/MassExpression: MassExpression

saveOutput

R Documentation

Save RData with SummarizedExperiment object and ProteinViz json

Save RData with SummarizedExperiment object and ProteinViz json

saveOutput(
  IntensityExperiment,
  CompleteIntensityExperiment,
  longIntensityDT,
  outputFolder
)

`IntensityExperiment`	Summarised experiment object returned by the 'runGenericDiscovery' function. This contains the initial data (row intensities and expeirment design) provided in input.
`CompleteIntensityExperiment`	Summarised experiment object returned by the 'runGenericDiscovery' function. This contains the results of the differential expression analysis, the intensities used for the analysis and a masking logical matrix showing which intensities have been imputed.
`longIntensityDT`	Tabular data structure resturned by the 'runGenericDiscovery' function. This contains, for each protein and sample, the raw, log2-transformed, normalised (when required) intensities, and a column indicating whether imputation has occurred for each intensity.
`outputFolder`	str. Path to folder where 'data' should be saved