API for Maxim-Ivanov/TranscriptomeReconstructoR
Data-driven Annotation of the Transcriptome
| Global functions | |
|---|---|
| adjust_exons_of_long_reads | Man page Source code |
| adjust_splice_sites | Source code |
| call_TCs | Man page Source code |
| call_transcribed_intervals | Man page Source code |
| call_transcripts_and_genes | Man page Source code |
| detect_alignment_errors | Man page Source code |
| extend_called_transcripts | Source code |
| extend_long_reads_to_TSS_and_PAS | Man page Source code |
| flip_strand_info | Man page Source code |
| load_BAM_files | Man page Source code |
| merge_GRanges | Man page Source code |
| process_nascent_intervals | Man page |
| refine_transcripts_by_annotation | Man page Source code |
| save_GRanges_as_bedGraph | Man page Source code |
| summarize_grl_width | Source code |
| update_tx_id | Source code |
| write_grl_as_bed12 | Man page Source code |
