write_grl_as_bed12: Save GRangesList object as BED12 file
In Maxim-Ivanov/TranscriptomeReconstructoR: Data-driven Annotation of the Transcriptome
View source: R/Utility_functions.R
write_grl_as_bed12 R Documentation
Save GRangesList object as BED12 file
Description
Save GRangesList object as BED12 file
Usage
write_grl_as_bed12(grl, filename, name_in_mcols = FALSE)
Arguments
grl
GRangesList object.
filename
Valid path to the output file.
name_in_mcols
Logical.
Details
This function does the same work as rtracklayer::export(format = "BED"),
with the added benefit that the S4Vectors::mcols(grl)$score is properly exported.
If name_in_mcols == TRUE, then the S4Vectors::mcols(grl)$name is exported as range names (otherwise the names(grl) is used).
Maxim-Ivanov/TranscriptomeReconstructoR documentation built on Oct. 3, 2023, 11:19 p.m.
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View source: R/Utility_functions.R
| write_grl_as_bed12 | R Documentation |
Save GRangesList object as BED12 file
Description
Save GRangesList object as BED12 file
Usage
write_grl_as_bed12(grl, filename, name_in_mcols = FALSE)
Arguments
grl |
|
filename |
Valid path to the output file. |
name_in_mcols |
Logical. |
Details
This function does the same work as rtracklayer::export(format = "BED"),
with the added benefit that the S4Vectors::mcols(grl)$score is properly exported.
If name_in_mcols == TRUE, then the S4Vectors::mcols(grl)$name is exported as range names (otherwise the names(grl) is used).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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