Files in McGranahanLab/TcellExTRECT
T cell Exome TREC Tool
DESCRIPTION
LICENSE
NAMESPACE
Non-commercial Academic License_TCellEXTRECT_final.docx
R/GCcorrect.R
R/adjustTcellExTRECT.R
R/baselineAdj.R
R/calcQCvalue.R
R/createExonDFBed.R
R/data.R
R/exonsTcellExTRECT.R
R/exonwindowplot2.R
R/getCovFromBam.R
R/getLogRdf.R
R/getVDJFraction.R
R/loadCov.R
R/medianExonCoverage.R
R/medianFilter.R
R/plotTcellExTRECT.R
R/runTcellExTRECT.R
R/slidingwindowplot_alt.R
R/sysdata.rda
R/utils-pipe.R
README.md
data/TCRA_exons_agilent_v2_hg19.rda
data/TCRA_exons_agilent_v2_hg38.rda
data/TCRA_exons_hg19.rda
data/TCRA_exons_hg38.rda
data/TCRA_exons_nimblegen_hg19.rda
data/TCRA_exons_nimblegen_hg38.rda
data/TCRA_fasta.rda
data/TCRA_segments.rda
data/cov_example.rda
data/tcra_seg_hg19.rda
data/tcra_seg_hg38.rda
man/GCcorrect.Rd
man/TCRA_exons_agilent_v2_hg19.Rd
man/TCRA_exons_agilent_v2_hg38.Rd
man/TCRA_exons_hg19.Rd
man/TCRA_exons_hg38.Rd
man/TCRA_exons_nimblegen_hg19.Rd
man/TCRA_exons_nimblegen_hg38.Rd
man/TCRA_fasta.Rd
man/TCRA_segments.Rd
man/adjustTcellExTRECT.Rd
man/baselineAdj.Rd
man/calcQCvalue.Rd
man/cov_example.Rd
man/createExonDFBed.Rd
man/exonsTcellExTRECT.Rd
man/exonwindowplot2.Rd
man/getCovFromBam.Rd
man/getLogRdf.Rd
man/getVDJFraction.Rd
man/loadCov.Rd
man/medianExonCoverage.Rd
man/medianFilter.Rd
man/pipe.Rd
man/plotTcellExTRECT.Rd
man/runTcellExTRECT.Rd
man/slidingwindowplot_alt.Rd
man/tcra_seg_hg19.Rd
man/tcra_seg_hg38.Rd
vignettes/TCellExTRECT_vignette.Rmd
