GCcorrect: Method for correcting for GC biases
In McGranahanLab/TcellExTRECT: T cell Exome TREC Tool
GCcorrect R Documentation
Method for correcting for GC biases
Description
Method for correcting for GC biases
Usage
GCcorrect(
tumour.logR,
exons,
exonList,
gene.fasta,
hg19_or38 = "hg19",
sliding = 1000
)
Arguments
tumour.logR
LogR values
exons
Location of exons
exonList
GC content of exons
gene.fasta
offset for FASTA file, e.g 21999999 for TCRA in hg19
hg19_or38
What genome version to use, must be 'hg19' or 'hg38'
sliding
number of bp for gc windows
Value
data frame of GC correct logR values
McGranahanLab/TcellExTRECT documentation built on Jan. 10, 2025, 11:04 p.m.
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| GCcorrect | R Documentation |
Method for correcting for GC biases
Description
Method for correcting for GC biases
Usage
GCcorrect(
tumour.logR,
exons,
exonList,
gene.fasta,
hg19_or38 = "hg19",
sliding = 1000
)
Arguments
tumour.logR |
LogR values |
exons |
Location of exons |
exonList |
GC content of exons |
gene.fasta |
offset for FASTA file, e.g 21999999 for TCRA in hg19 |
hg19_or38 |
What genome version to use, must be 'hg19' or 'hg38' |
sliding |
number of bp for gc windows |
Value
data frame of GC correct logR values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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