baselineAdj: Calculate median values of coverage within exons in rolling...
In McGranahanLab/TcellExTRECT: T cell Exome TREC Tool
baselineAdj R Documentation
Calculate median values of coverage within exons in rolling windows
Description
Calculate median values of coverage within exons in rolling windows
Usage
baselineAdj(vdj_logR_input, vdj_seg, GCcorrect = TRUE)
Arguments
vdj_logR_input
data frame of positions and coverage values
vdj_seg
Segments used for normalisation
GCcorrect
Use GC corrected output or not
Value
Adjusted baseline logR dataframe
McGranahanLab/TcellExTRECT documentation built on Jan. 10, 2025, 11:04 p.m.
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| baselineAdj | R Documentation |
Calculate median values of coverage within exons in rolling windows
Description
Calculate median values of coverage within exons in rolling windows
Usage
baselineAdj(vdj_logR_input, vdj_seg, GCcorrect = TRUE)
Arguments
vdj_logR_input |
data frame of positions and coverage values |
vdj_seg |
Segments used for normalisation |
GCcorrect |
Use GC corrected output or not |
Value
Adjusted baseline logR dataframe
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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