calcQCvalue: Method for calculating QC values to judge GAM fit
In McGranahanLab/TcellExTRECT: T cell Exome TREC Tool
calcQCvalue R Documentation
Method for calculating QC values to judge GAM fit
Description
Method for calculating QC values to judge GAM fit
Usage
calcQCvalue(tumour.logR, segs, GC_correct = TRUE, ci_type = "simultaneous")
Arguments
tumour.logR
LogR values
segs
GC content of exons
GC_correct
whether to use GC correction or not for output
ci_type
FASTA file for VDJ gene e.g TCRA
Value
QC values for judging fit of GAM model
McGranahanLab/TcellExTRECT documentation built on Jan. 10, 2025, 11:04 p.m.
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| calcQCvalue | R Documentation |
Method for calculating QC values to judge GAM fit
Description
Method for calculating QC values to judge GAM fit
Usage
calcQCvalue(tumour.logR, segs, GC_correct = TRUE, ci_type = "simultaneous")
Arguments
tumour.logR |
LogR values |
segs |
GC content of exons |
GC_correct |
whether to use GC correction or not for output |
ci_type |
FASTA file for VDJ gene e.g TCRA |
Value
QC values for judging fit of GAM model
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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