getVDJFraction: Method for calculating final VDJ fraction
In McGranahanLab/TcellExTRECT: T cell Exome TREC Tool
View source: R/getVDJFraction.R
getVDJFraction R Documentation
Method for calculating final VDJ fraction
Description
Method for calculating final VDJ fraction
Usage
getVDJFraction(
tumour.logR,
segs,
norm.ci.95,
GC.correct = FALSE,
ci_type = "simultaneous"
)
Arguments
tumour.logR
log ratio in region
segs
Location of segments used for normalisation and focal region
norm.ci.95
Adjusted value for 95% CI
GC.correct
Whether to use GC corrected value or not
ci_type
Method to use for calculation of the confidence interval
Value
VDJ fraction and upper and lower CI values
McGranahanLab/TcellExTRECT documentation built on Jan. 10, 2025, 11:04 p.m.
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View source: R/getVDJFraction.R
| getVDJFraction | R Documentation |
Method for calculating final VDJ fraction
Description
Method for calculating final VDJ fraction
Usage
getVDJFraction(
tumour.logR,
segs,
norm.ci.95,
GC.correct = FALSE,
ci_type = "simultaneous"
)
Arguments
tumour.logR |
log ratio in region |
segs |
Location of segments used for normalisation and focal region |
norm.ci.95 |
Adjusted value for 95% CI |
GC.correct |
Whether to use GC corrected value or not |
ci_type |
Method to use for calculation of the confidence interval |
Value
VDJ fraction and upper and lower CI values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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