Files in Miaoyx323/stCancer
stCancer
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/CNV.R
R/NMF.R
R/SpatialStructure.R
R/interaction.R
R/plotting.R
R/signature.R
R/stAnnotation.R
R/stStatistics.R
R/utils.R
README.md
inst/rds/cancerSEA.RDS
inst/rds/cellphonedb.RDS
inst/rds/cnvRef_Data-HM.RDS
inst/rds/cnvRef_Data-boneMarrow-MS.RDS
inst/rds/cnvRef_SNN-HM.RDS
inst/rds/cnvRef_SNN-boneMarrow-MS.RDS
inst/rmd/CNVAnalysis.Rmd
inst/rmd/NMFAnalysis.Rmd
inst/rmd/Phenotype.Rmd
inst/rmd/cellTypeScore.Rmd
inst/rmd/diffExpr.Rmd
inst/rmd/interaction.Rmd
inst/rmd/stAnno.Rmd
inst/rmd/stStat.Rmd
inst/rmd/total_interaction.Rmd
inst/txt/EMT.txt
inst/txt/cellCycle-genes.txt
inst/txt/ct.anno.txt
inst/txt/diss-genes.txt
inst/txt/gene-chr-hg19.txt
inst/txt/gene-chr-hg38.txt
inst/txt/gene-chr-mm10.txt
inst/txt/hg-mm-HomologyGenes.txt
inst/txt/pcbc-stemsig.tsv
inst/txt/stem.txt
inst/txt/tls.txt
man/CellCycleAnalysis.Rd
man/EMTAnalysis.Rd
man/Feature_Plot.Rd
man/GeneSpatialPlot.Rd
man/Load_Spatial.Rd
man/Read_Image.Rd
man/SpatialDim_Plot.Rd
man/SpatialFeature_Plot.Rd
man/SpatialInteraction.Rd
man/SpatialScoring.Rd
man/SpatialStructureDetection.Rd
man/Spatial_Plot.Rd
man/StemnessAnalysis.Rd
man/TLSAnalysis.Rd
man/TumorCharacters.Rd
man/addGeneAnno.Rd
man/cellTypeScore.Rd
man/clusterBarPlot.Rd
man/combine_spot.Rd
man/filePathCheck.Rd
man/genePropPlot.Rd
man/geom_spatial.Rd
man/getDefaultColors.Rd
man/getDefaultDimColors.Rd
man/getDefaultFeatureColors.Rd
man/getGeneManifest.Rd
man/getMouseGene.Rd
man/getPlotCol.Rd
man/getPointSize.Rd
man/ggplot_config.Rd
man/grid_arrange_shared_legend.Rd
man/histPlot.Rd
man/histPlot.data.frame.Rd
man/limitData.Rd
man/plotMalignancy.Rd
man/pointDRPlot.Rd
man/preDEheatmap.Rd
man/prepareCNV.Rd
man/regionprops.Rd
man/rm_isolated_spot.Rd
man/runCNVAnalysis.Rd
man/runCopyKAT.Rd
man/runInferCNV.Rd
man/runMalignancy.Rd
man/runNMF.Rd
man/stAnnotation.Rd
man/stStatistics.Rd
