Counting label transitions in phylogenetic stochastic mapping

brownian_crossing_post2 | Posterior probability for the number of crossing given tip... |

brownian_crossing_post3 | Posterior probability for the number of crossing given tip... |

brown_tree_prior2 | Prior probability for the number of crossing on phylogenetic... |

brown_tree_prior_grid | Generating libility value on each node of the phylogenetic... |

brown_tree_prior_node | Generating libility value on each node of the phylogenetic... |

crossing | Counting the number of Crossing of a process |

CTMC.line.sample | Sample the number of gaining traits on a line based on CTMC |

fastpost2 | Posterior probability for the number of crossing given the... |

fills_in | Generating the number of crossings given the nodes liabilties... |

hello | Hello, World! |

MLEphy | package |

MLEphy.log | Calculate the two-state CTMC likelihood with rate in log... |

mx_counts | link CTMC with brownian motion |

OUbridge | simulating and counting the sample path of OU bridge or... |

OUpath | simulate the sample path of OU-process or Brownian motion |

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