brown_tree_prior2: Prior probability for the number of crossing on phylogenetic...

In MingweiWilliamTang/BMIthreshCount: Counting label transitions in phylogenetic stochastic mapping

Description

Prior probability for the number of crossing on phylogenetic tree

Usage

brown_tree_prior2(phy, thed = 0, epsilon, root.prior, up = T,
  nsize = 1000, k = 0)

Arguments

phy	A phylo type object.
thed	the threshold value for Brownian motion threshold model.
epsilon	the radius of the interval for crossing.
root.prior	A numeric vector with two values, which is the mean and variance for the prior distribution (normal) for the root liability.
up	Previous crossing direction. Set as TRUE for defaulted value.
nsize	number of simulations for Monte-Carlo integral

Value

A vector associate with the prior probabililty for the number of upcrossing

MingweiWilliamTang/BMIthreshCount documentation built on May 7, 2019, 4:57 p.m.