NEWS.md

In MonashBioinformaticsPlatform/varistran: Variance Stabilizing Transformations appropriate for RNA-Seq expression data

varistran 1.1.0

• Add samesum log transformation method.

varistran 1.0.5

• plot_heatmap now has parameters baseline_to and scale_to giving control over the ranges of the scales, and parameters show_baseline and show_tree giving control over what parts of the plot are shown.

varistran 1.0.4

• Increase robustness of heatmap to missing values.
• Baseline plot is not shown in heatmap if all zero.

varistran 1.0.3

• No code changes. Updated README with references and supporting/contributing section.

varistran 1.0.2

• Added n parameter to plot_heatmap, to show only the top n rows by span of expression levels.
• Remove dependency on ggdenro, which is not available in R 3.4.1.
• Added packages needed for testing to suggested dependencies: biomaRt, DESeq2, NBPSeq

MonashBioinformaticsPlatform/varistran documentation built on June 9, 2025, 8:36 a.m.