Man pages for MorrisseyLab/CryptDriftR
Analyse crypt lineage tracing data
| CryptDriftR-package | Simulate, analyse and plot crypt clonal data |
| fitBiasedDrift | Fit crypt biased stem cell drift model. |
| fitNeutralDrift | Fit crypt neutral drift model. |
| format_exp_data | Calculate proportions with 95% credible interval (confidence... |
| format_th_data | Adjust theory drift data for plotting |
| getNeutralDirftParams | MAP estimate of parameters |
| LinearGillespie | Run linear Gillespie simulations. 'LinearGillespie' |
| plotPosterior_Neutral | MCMC inference plots for neutral drift model |
| plotPosterior_Pr | MCMC inference plots for biased drift model |
| plotsBiasDrift_Fit | Plot data with biased drift model fit |
| plotsConvergence_Biased | MCMC convergence plots |
| plotsConvergence_Neutral | MCMC convergence plots |
| plotsNeutralDrift_Fit | Plot data with neutral drift model fit |
| rcpparma_hello_world | Set of functions in example RcppArmadillo package |
| sim_contLabelling | Simulate the continuous labelling model using the gillespie... |
| simulateBiasedDriftData | Simulate data from biased drift model for testing inference. |
| simulateNeutralDriftData | Simulate data from neutral drift model for testing inference. |
| th_contLabelling | Analytical approximation to continuous labelling model. |
| th_contLabelling_slope_and_partials | Analytical approximation to continuous labelling model, also... |
| th_PulseChase | Analytical solution to stem cell label drift model.... |
