Files in MorrisseyLab/CryptDriftR
Analyse crypt lineage tracing data
.Rbuildignore
.gitignore
CryptDriftR.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/CryptDriftR.R
R/DriftFunctions.R
R/RcppExports.R
R/fit_BiasedDrift.R
R/fit_NeutralDrift.R
R/format_data.R
README.md
data/PulseChaseData.rda
man/CryptDriftR-package.Rd
man/LinearGillespie.Rd
man/fitBiasedDrift.Rd
man/fitNeutralDrift.Rd
man/format_exp_data.Rd
man/format_th_data.Rd
man/getNeutralDirftParams.Rd
man/plotPosterior_Neutral.Rd
man/plotPosterior_Pr.Rd
man/plotsBiasDrift_Fit.Rd
man/plotsConvergence_Biased.Rd
man/plotsConvergence_Neutral.Rd
man/plotsNeutralDrift_Fit.Rd
man/rcpparma_hello_world.Rd
man/sim_contLabelling.Rd
man/simulateBiasedDriftData.Rd
man/simulateNeutralDriftData.Rd
man/th_PulseChase.Rd
man/th_contLabelling.Rd
man/th_contLabelling_slope_and_partials.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/biased_drift_functions.cpp
src/biased_drift_functions.hpp
src/common_mcmc_funcs.cpp
src/common_mcmc_funcs.hpp
src/mcmcBiasedDrift.cpp
src/mcmcBiasedDrift.hpp
src/mcmcBiasedDrift_wLambda.cpp
src/mcmcBiasedDrift_wLambda.hpp
src/mcmcNeutralDrift.cpp
src/mcmcNeutralDrift.hpp
src/wrappers_2_c_functions.cpp
vignettes/Replicate_Biased_Drift_Science.R
vignettes/Replicate_Biased_Drift_Science.Rmd
vignettes/Replicate_Biased_Drift_Science.html
