CryptDriftR-package: Simulate, analyse and plot crypt clonal data
In MorrisseyLab/CryptDriftR: Analyse crypt lineage tracing data
Description
A set of functions are provided to simulate neutral drift, biased drift and continuous labelling.
Functions are also provided to infer drift parameters from crypt count data.
The models are explained in detail in "Continuous clonal labeling reveals small numbers of functional stem cells in intestinal crypts and adenomas."
Kozar, Morrissey et. al. 2013 Cell Stem Cell, as well as "Defining stem cell dynamics in models of intestinal tumor initiation."
Vermeulen, Morrissey, et. al. Science 2013.
MorrisseyLab/CryptDriftR documentation built on Aug. 7, 2021, 8:22 p.m.
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Description
A set of functions are provided to simulate neutral drift, biased drift and continuous labelling. Functions are also provided to infer drift parameters from crypt count data. The models are explained in detail in "Continuous clonal labeling reveals small numbers of functional stem cells in intestinal crypts and adenomas." Kozar, Morrissey et. al. 2013 Cell Stem Cell, as well as "Defining stem cell dynamics in models of intestinal tumor initiation." Vermeulen, Morrissey, et. al. Science 2013.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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