| .annotation_combinations |
Source code
|
| .combine_annotations |
Source code
|
| .combine_enrichments |
Source code
|
| .combine_enrichments_multiple |
Source code
|
| .combine_enrichments_single |
Source code
|
| .extract_statistics_combined_enrichment |
Source code
|
| .extract_statistics_statistical_results |
Source code
|
| .generate_annotation_graph |
Source code
|
| .generate_table |
Source code
|
| .get_significant_combined_enrichment |
Source code
|
| .get_significant_stat_results |
Source code
|
| .remove_edges_ccgraph |
Source code
|
| .remove_edges_cw |
Source code
|
| add_data_to_graph |
Man page
Source code
|
| add_tooltip |
Man page
Source code
|
| annotation |
Man page
Source code
|
| annotation_2_json |
Man page
Source code
|
| annotation_combinations |
Man page
|
| annotation_combinations,cc_graph-method |
Man page
|
| annotation_combinations,significant_annotations-method |
Man page
|
| annotation_gene_table |
Man page
Source code
|
| assign_colors |
Man page
Source code
|
| assign_communities |
Man page
Source code
|
| assign_features |
Source code
|
| base64_encode_images |
Source code
|
| binomial_basic |
Man page
Source code
|
| binomial_feature_enrichment |
Man page
Source code
|
| binomial_features-class |
Man page
|
| binomial_result |
Man page
|
| binomial_result-class |
Man page
|
| categoryCompare2 |
Man page
|
| cc_graph |
Man page
Source code
|
| check_is_positive_integer |
Source code
|
| check_package_installed |
Source code
|
| combine_annotation_features |
Man page
Source code
|
| combine_annotations |
Man page
|
| combine_annotations,list-method |
Man page
|
| combine_enrichments |
Man page
|
| combine_enrichments,enriched_result-method |
Man page
|
| combine_enrichments,list-method |
Man page
|
| combine_text |
Man page
Source code
|
| combined_coefficient |
Man page
Source code
|
| combined_enrichment |
Man page
|
| combined_enrichment-class |
Man page
|
| combined_significant_calls |
Man page
Source code
|
| combined_statistics |
Man page
Source code
|
| csv_annotation_table |
Man page
Source code
|
| enriched_result |
Man page
Source code
|
| enriched_to_fgsea |
Man page
Source code
|
| executable_path |
Man page
Source code
|
| extract_enrich_stats |
Man page
Source code
|
| extract_statistics |
Man page
|
| extract_statistics,combined_enrichment-method |
Man page
|
| extract_statistics,statistical_results-method |
Man page
|
| filter_annotation_graph |
Man page
Source code
|
| generate_annotation_graph |
Man page
|
| generate_annotation_graph,combined_enrichment-method |
Man page
|
| generate_annotation_similarity_graph |
Man page
Source code
|
| generate_colors |
Man page
Source code
|
| generate_legend |
Man page
Source code
|
| generate_link |
Man page
Source code
|
| generate_piecharts |
Man page
Source code
|
| generate_table |
Man page
|
| generate_table,combined_enrichment-method |
Man page
|
| get_db_annotation |
Man page
Source code
|
| get_significant_annotations |
Man page
|
| get_significant_annotations,combined_enrichment-method |
Man page
|
| get_significant_annotations,statistical_results-method |
Man page
|
| get_significant_annotations_calls |
Man page
Source code
|
| gocats_to_annotation |
Man page
Source code
|
| graph_to_visnetwork |
Man page
Source code
|
| gsea_feature_enrichment |
Man page
Source code
|
| gsea_features-class |
Man page
|
| have_parallel |
Source code
|
| hypergeom_features-class |
Man page
|
| hypergeometric_basic |
Man page
Source code
|
| hypergeometric_feature_enrichment |
Man page
Source code
|
| install_executables |
Man page
Source code
|
| jaccard_coefficient |
Man page
Source code
|
| json_2_annotation |
Man page
Source code
|
| json_annotation_reversal |
Man page
Source code
|
| kable_annotation_table |
Man page
Source code
|
| label_communities |
Man page
Source code
|
| multi_query_list |
Man page
Source code
|
| multi_query_list_calls |
Source code
|
| node_assign |
Man page
|
| node_assign-class |
Man page
|
| overlap_coefficient |
Man page
Source code
|
| remove_edges |
Man page
|
| remove_edges,cc_graph,numeric-method |
Man page
|
| remove_edges,character,numeric-method |
Man page
|
| replace_null |
Source code
|
| show,annotation-method |
Man page
|
| show,binomial_result-method |
Man page
|
| show,cc_graph-method |
Man page
|
| show,combined_statistics-method |
Man page
|
| show,enriched_result-method |
Man page
|
| show,node_assign-method |
Man page
|
| show,significant_annotations-method |
Man page
|
| significant_annotations |
Man page
Source code
|
| statistical_results |
Man page
|
| statistical_results-class |
Man page
|
| table_from_graph |
Man page
Source code
|
| vis_in_cytoscape |
Man page
Source code
|
| vis_visnetwork |
Man page
Source code
|
