hypergeometric_feature_enrichment: do hypergeometric enrichment

In MoseleyBioinformaticsLab/categoryCompare2: Meta-Analysis of High-Throughput Experiments Using Feature Annotations

do hypergeometric enrichment

Description

do hypergeometric enrichment

Usage

hypergeometric_feature_enrichment(
  hypergeom_features,
  direction = "over",
  p_adjust = "BH",
  min_features = 1
)

Arguments

hypergeom_features	a hypergeometric_features object
direction	which direction to do the enrichment (over or under)
p_adjust	how to correct the p-values (default is "BH")
min_features	how many features should be annotated before testing it?

Details

The min_features argument here applies to the minumum number of features an annotation has from the universe of features supplied, not the minumum number of features from the differential list. For more about the p-value adjustment, see stats::p.adjust

Value

enriched_result

MoseleyBioinformaticsLab/categoryCompare2 documentation built on April 30, 2024, 9:09 p.m.