annotation_gene_table: annotation to genes

In MoseleyBioinformaticsLab/categoryCompare2: Meta-Analysis of High-Throughput Experiments Using Feature Annotations

annotation to genes

Description

Creates a tabular output of annotations to genes providing lookup of which genes are contributing to a particular annotation.

Usage

annotation_gene_table(
  combined_enrichment,
  annotations = NULL,
  use_db = NULL,
  input_type = "ENTREZID",
  gene_info = c("SYMBOL", "GENENAME")
)

Arguments

combined_enrichment	combined enrichment object
annotations	which annotations to grab features from
use_db	the annotation database
input_type	what type of gene id was it?
gene_info	what type of info to return for each gene

Value

data.frame

MoseleyBioinformaticsLab/categoryCompare2 documentation built on Dec. 18, 2024, 7:29 p.m.