binomial_feature_enrichment: do binomial testing

In MoseleyBioinformaticsLab/categoryCompare2: Meta-Analysis of High-Throughput Experiments Using Feature Annotations

do binomial testing

Description

do binomial testing

Usage

binomial_feature_enrichment(
  binomial_features,
  p_expected = 0.5,
  direction = "two.sided",
  p_adjust = "BH",
  conf_level = 0.95,
  min_features = 1
)

Arguments

binomial_features	a binomial_features object
p_expected	the expected probability (default 0.5)
direction	which direction to do the enrichment (two.sided, less, greater)
p_adjust	how to correct the p-values (default is "BH")
conf_level	the confidence level for the confidence interval (default is 0.95)
min_features	a minimum number of features that are annotated to each annotation

Value

enriched_result

MoseleyBioinformaticsLab/categoryCompare2 documentation built on Dec. 18, 2024, 7:29 p.m.