generate_annotation_graph: generate annotation graph

In MoseleyBioinformaticsLab/categoryCompare2: Meta-Analysis of High-Throughput Experiments Using Feature Annotations

generate annotation graph

Description

given a combined_enrichment, generate the annotation similarity graph

Usage

generate_annotation_graph(
  comb_enrichment,
  annotation_similarity = "combined",
  low_cut = 5,
  hi_cut = 500
)

## S4 method for signature 'combined_enrichment'
generate_annotation_graph(
  comb_enrichment,
  annotation_similarity = "combined",
  low_cut = 5,
  hi_cut = 500
)

Arguments

comb_enrichment	the combined_enrichment object
annotation_similarity	which similarity measure to use
low_cut	keep only those annotations in the graph with at least this many annotated features
hi_cut	keep only those annotations with less than this many annotated features

Value

cc_graph

MoseleyBioinformaticsLab/categoryCompare2 documentation built on Dec. 18, 2024, 7:29 p.m.