Man pages for Mystilivia/SDjoygret
Testing R Package
| check.list.format | Check format of dlist |
| compare_means_letters | Statistical test and letters |
| compare_means_letters_2 | Statistical test and letters |
| dataframe.transform | Transform a datamatrix and replace zero |
| data.ttest | 3 levels t-test |
| densplot | 2 dimension plot with density |
| dlist.class | Check dlist class |
| dlist.opls | Perform OPLS and custom plots |
| dlist.pca | Perform PCA and custom plot |
| dlist.pca.old | Perform PCA and custom plot |
| dlist.plot.table | dlist plot table |
| dlist.ropls.data | Return a list for plotting ropls results |
| dlist.ropls.min | Perform pca, pls(da) or opls(da) with ropls |
| dlist_stat_table | Do pairwise statistical tests on dlist |
| dlist_stat_table1 | Do pairwise statistical tests on dlist |
| dlist.subset | Subset list |
| dlist.summary | dlist summary |
| dlist.transform | Transform function for dlist |
| d.t.transform | Transform a datamatrix and replace zero |
| find.limits | Find scales for plots |
| galaxylist.save.list | Save file for GALAXY |
| get_sign | get_sign |
| ggplot_opls_vips | Plot OPLS results with VIPs |
| g_legend | Get legend of a ggplot |
| importWorksheets.xls | Import Excel file to list |
| import.xls.2 | Import Excel's sheets to a list |
| mz.database | Search mz values in a database |
| mz.ppm | Formula to return mz +- ppm |
| plotheme.auto | Semi-automatic ggplot theme |
| roplsplot | Plot ropls results |
| ropls_plot_vips | Plot VIPs from opls object |
| sacurine.df | Sacurine data from ropls |
| sacurine.dlist | Sacurine data from ropls |
| sacurine.dt | Sacurine data from ropls |
| sacurine.tbl | Sacurine data from ropls |
| scale_pareto | Pareto scaling |
| SD_batch_list | SD_batch_list |
| SD_batch_set | SD_batch_set |
| size | Get size of object or list objects |
| splitdf | Split a dataframe |
| stat_table | Do pairwise statistical tests on dlist |
| table_summary | Summary on table |
| test | TITLE |
| to.data.table | Check dlist table format and convert to data.table |
| transf_glog | glog transformation |
| waters_txt | Read and format MassLynx text file |
| write.csv3 | Write CSV for Excel Fr |
| xcms_orbi_A | xcms_orbi_A |
| xcms_orbi_A2 | xcms_orbi_A2 |
| xcms_orbi_GRT | xcms_orbi_GRT |
| xcms_orbi_Results | xcms_orbi_Results |
| xcmsSet.Result.List | 3 Levels list from xcmsSet Object |
