xcms_orbi_Results: xcms_orbi_Results

In Mystilivia/SDjoygret: Testing R Package

Description

This function generate peak_table, STDs EIC across samples, PCA (optional) and return a list with [1] datamatrix, [2] sample.metadata and [3] variable.metadata.

Usage

xcms_orbi_GRT(xcms_set_obj, Results.dir.name="Default", bw_param=c(25, 10, 0.7), mzwid_param=0.005, minfrac_param=0.25, profStep_param=0.8)
xcms_orbi_GRT()

Arguments

filled_peak_object	An xcmsSet object with filled peaks
STDs_mass	Vector of STDs exact mass
STDs_ppm	Deviation for STDs in ppm (try to increase if your STDs are not found)
perform_PCA	Logical to do PCA analysis or not
Sample.Metadata	Dataframe with samples metadata
PCA_group	vector with samples metadata column to use for groups in ACP

Mystilivia/SDjoygret documentation built on May 7, 2019, 5:17 p.m.