dlist.opls: Perform OPLS and custom plots

In Mystilivia/SDjoygret: Testing R Package

Description

Perform an OPLS analysis using "ropls" package and plot results if asked (scores, loadings, VIPs & summary).

Usage

dlist.opls(dlist, Opls.y = NA, ..., VIPxlabels = F, VIP.thr = 1,
  ShowPlot = T, plotheme.auto.args = list(geom_ellipse = T, Legend.L = T,
  colorL = T, geom_path = F, labelsL = F, labels = NULL))

Arguments

dlist	list of three dataframes : [[1]] Datamatrix, [[2]] SamplesMetadata [[3]] VariableMetadata.
Opls.y	Name of the grouping factor used in OPLS
...	Arguments to pass to opls function
VIPxlabels	Logical to show VIPs plot x labels
VIP.thr	Threshold for VIPs selestion and coloring
ShowPlot	Logical to draw plots in graphic device
plotheme.auto.args	List of arguments to pass to plotheme.auto

Value

A list with (OPLS, Plot, VIPS)

Examples

dlist.opls()

Mystilivia/SDjoygret documentation built on May 7, 2019, 5:17 p.m.