Files in NBISweden/genecovr
Gene body coverage analysis to evaluate genome assemblies
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.lintr
.pre-commit-config.yaml
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllGenerics.R
R/genecovr-package.R
R/methods-AlignmentPairs-class.R
R/methods-AlignmentPairsList-class.R
R/methods-GRanges-class.R
R/methods-psl.R
R/methods-sequence-data.R
README.Rmd
README.md
_pkgdown.yml
inst/bin/genecovr
inst/extdata/nonpolished.fai
inst/extdata/polished.fai
inst/extdata/transcripts.fai
inst/extdata/transcripts2nonpolished.psl
inst/extdata/transcripts2polished.psl
man/AlignmentPairs-class.Rd
man/AlignmentPairsList-class.Rd
man/as.data.frame-AlignmentPairsList-method.Rd
man/autoplot.AlignmentPairsList.Rd
man/breadthOfCoverage.Rd
man/countSubjectsByCoverage.Rd
man/deletions-methods.Rd
man/divergence-methods.Rd
man/geneBodyCoverage.Rd
man/genecovr-package.Rd
man/insertions-methods.Rd
man/matches-methods.Rd
man/plot.AlignmentPairsList.Rd
man/psl-methods.Rd
man/query-methods.Rd
man/readFastaIndex.Rd
man/readPsl.Rd
man/reduceHitCoverage.Rd
man/sbjct-methods.Rd
man/score-methods.Rd
man/sequence-data-methods.Rd
man/summarizeGeneBodyCoverage.Rd
tests/testthat.R
tests/testthat/setup.R
tests/testthat/test-alignmentpairs.R
tests/testthat/test-genecovr.R
tests/testthat/test-gmap.R
tests/testthat/test-psl.R
vignettes/bibliography.bib
vignettes/empirical.Rmd
vignettes/genecovr.Rmd
