NEWS.md

In NBISweden/genecovr: Gene body coverage analysis to evaluate genome assemblies

genecovr 0.1.1

• update README
• add Empirical studies section

genecovr 0.1.0

• add pkgdown site

genecovr 0.0.0.9013

• fix factor level ordering for geneBodyCoverage plot
• save geneBodyCoverage as tsv

genecovr 0.0.0.9012

• adjust factor levels for number of inserts (#4)
• summarize number of inserts by transcript (#5)

genecovr 0.0.0.9011

• fix order of factors

genecovr 0.0.0.9010

• remove duplicate entries in psl input

genecovr 0.0.0.9009

• add plot of transcript length distributions conditioned on number of mapped contigs
• fix y axis for histogram plots
• increase point size of some plots
• summarizeGeneBodyCoverage and countSubjectsByCoverage now accept DataFrame inputs, obviating the need to rerun geneBodyCoverage multiple times in genecovr script

genecovr 0.0.0.9008

• Remove characters trailing first space in fasta headers

genecovr 0.0.0.9007

• Fix conversion of DNAStringSet to Seqinfo
• Make sure geneBodyCoverage table has nmax levels

genecovr 0.0.0.9006

• add depthOfCoverage function and analysis to vignette and script
• reduceHitCoverage is deprecated
• improve some docs
• add wrapper for saving plots
• add tests mainly for alignmentpairs and test setup

NBISweden/genecovr documentation built on Jan. 26, 2024, 7:15 a.m.