clusterFilter: Filter seurat object by specified cluster ids

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Filter seurat object by specified cluster ids

Description

Filter seurat object by specified cluster ids

Usage

clusterFilter(so, include = NULL, omit = NULL, which.field = "seurat_clusters")

Arguments

so	Seurat Object
include	Cluster ids to include. Optional, NULL if unspecified.
omit	Cluster ids to omit. Optional, NULL if unspecified.
which.field	Metadata field to filter by. Default is 'seurat_clusters'

Value

Seurat Object

Author(s)

Nicholas Mikolajewicz

Examples

# specify filtering parameters
filter.parameters <- list(
     include = NULL,
     omit = c(8,9)
     )

# filter seurat
so.filtered <- clusterFilter(so, include = filter.parameters$include, omit = filter.parameters$omit)

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.