consolidateNMF: Consolidate several NMF reduction objects into single NMF...

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Consolidate several NMF reduction objects into single NMF reduction object within Seurat object.

Description

Consolidate several NMF reduction objects into single NMF reduction object within Seurat object.

Usage

consolidateNMF(object, reduction_key = "nmf")

Arguments

object	Seurat object containing several NMF reductions (e.g., each NMF with different k parameter)
reduction_key	Reduction key used to identify reduction objects for consolidation. Default is "nmf".

Value

Seurat object with with several NMF reductions consolidated into "nmf_all" reduction object.

Author(s)

Nicholas Mikolajewicz

References

https://nmikolajewicz.github.io/scMiko/articles/Module_Detection.html

See Also

runNMF

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.