Nanostring-Biostats/GeoDiff: Count model based differential expression and normalization on GeoMx RNA data

A series of statistical models using count generating distributions for background modelling, feature and sample QC, normalization and differential expression analysis on GeoMx RNA data. The application of these methods are demonstrated by example data analysis vignette.

Getting started

Package details

Bioconductor views DifferentialExpression GeneExpression Normalization
Maintainer
LicenseMIT + file LICENSE
Version1.1.3
URL https://github.com/Nanostring-Biostats/GeoDiff
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Nanostring-Biostats/GeoDiff")
Nanostring-Biostats/GeoDiff documentation built on April 24, 2022, 5:54 p.m.